protein database Search Results


saccharomyces cerevisiae up00002311 protein sequence database  (Thermo Fisher)
92
Thermo Fisher saccharomyces cerevisiae up00002311 protein sequence database
Saccharomyces Cerevisiae Up00002311 Protein Sequence Database, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nonredundant protein databases  (Prottech Inc)
90
Prottech Inc nonredundant protein databases
Nonredundant Protein Databases, supplied by Prottech Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nonredundant protein databases - by Bioz Stars, 2026-10
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h. neapolitanus protein database  (ProtiFi)
90
ProtiFi h. neapolitanus protein database
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
H. Neapolitanus Protein Database, supplied by ProtiFi, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam protein  (InterPro Inc)
90
InterPro Inc pfam protein
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Pfam Protein, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam protein - by Bioz Stars, 2026-10
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interpro protein databases  (InterPro Inc)
90
InterPro Inc interpro protein databases
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Interpro Protein Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/interpro+protein+database/pmc02897356-20-18-18
Average 90 stars, based on 1 article reviews
interpro protein databases - by Bioz Stars, 2026-10
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protein databases  (InterPro Inc)
90
InterPro Inc protein databases
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Protein Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/protein+database/pmc02645405-86-4-15
Average 90 stars, based on 1 article reviews
protein databases - by Bioz Stars, 2026-10
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protein domain databases  (InterPro Inc)
90
InterPro Inc protein domain databases
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Protein Domain Databases, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/protein+domain+database/us11366120-122-30-37
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protein domain databases - by Bioz Stars, 2026-10
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integrated resource of protein families, domains and functional sites database of uniprot consortium (interpro)  (InterPro Inc)
90
InterPro Inc integrated resource of protein families, domains and functional sites database of uniprot consortium (interpro)
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Integrated Resource Of Protein Families, Domains And Functional Sites Database Of Uniprot Consortium (Interpro), supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/integrated+resource+of+protein+families++domains+and+functional+sites+database+of+uniprot+consortium++interpro+/pmc05374389-121-16-26
Average 90 stars, based on 1 article reviews
integrated resource of protein families, domains and functional sites database of uniprot consortium (interpro) - by Bioz Stars, 2026-10
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lifeseq annotated gene and expressed sequence-tag databases; proteome bioknowledge library species-specific protein information databases; bioinformatics software  (Incyte corporation)
90
Incyte corporation lifeseq annotated gene and expressed sequence-tag databases; proteome bioknowledge library species-specific protein information databases; bioinformatics software
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Lifeseq Annotated Gene And Expressed Sequence Tag Databases; Proteome Bioknowledge Library Species Specific Protein Information Databases; Bioinformatics Software, supplied by Incyte corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/lifeseq+annotated+gene+and+expressed+sequence+tag+databases++proteome+bioknowledge+library+species+specific+protein+information+databases++bioinformatics+software/10__1038_slash_422924a-4-130-121
Average 90 stars, based on 1 article reviews
lifeseq annotated gene and expressed sequence-tag databases; proteome bioknowledge library species-specific protein information databases; bioinformatics software - by Bioz Stars, 2026-10
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proteins sequences from swissprot vertebrates’ database  (Gallus BioPharmaceuticals)
90
Gallus BioPharmaceuticals proteins sequences from swissprot vertebrates’ database
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Proteins Sequences From Swissprot Vertebrates’ Database, supplied by Gallus BioPharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/proteins+sequences+from+swissprot+vertebrates%E2%80%99+database/pm32077944-283-1-19
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proteins sequences from swissprot vertebrates’ database - by Bioz Stars, 2026-10
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human yeast two-hybrid protein interaction network database  (Prolexys Pharmaceuticals)
90
Prolexys Pharmaceuticals human yeast two-hybrid protein interaction network database
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Human Yeast Two Hybrid Protein Interaction Network Database, supplied by Prolexys Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/human+yeast+two+hybrid+protein+interaction+network+database/pmc11158977-293-26-32
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human yeast two-hybrid protein interaction network database - by Bioz Stars, 2026-10
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mips mammalian protein–protein interaction database  (Kaltenbach GmbH)
90
Kaltenbach GmbH mips mammalian protein–protein interaction database
( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. <t>neapolitanus</t> operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.
Mips Mammalian Protein–Protein Interaction Database, supplied by Kaltenbach GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protein+database/mips+mammalian+protein+protein+interaction+database/10__1186_slash_1471___2164___11___s5___s9-356-25-8
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Image Search Results


( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. neapolitanus operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.

Journal: bioRxiv

Article Title: Decoding the absolute stoichiometric composition and structural plasticity of α-carboxysomes

doi: 10.1101/2021.12.06.471529

Figure Lengend Snippet: ( A ) QconCAT DNA fragment was designed from selected gene sequences from the H. neapolitanus operon that expresses α-carboxysome proteins. The stable isotopes ([ 13 C 6 , 15 N 4 ] arginine and [ 13 C 6 , 15 N 2 ] lysine) labelled QconCAT peptide fusion was expressed via a cell-free system, purified and quantified and added to four replicates samples of isolated native/recombinant α-carboxysomes from H. neapolitanus and E. coli . The absolute quantity and stoichiometry of unlabelled signature peptides for carboxysomal proteins were calculated by LC-MS analysis. One signature peptide for CbbQ, LLVKAGK was shown here as an example. ( B ) SDS-PAGE of isolated native/recombinant α-carboxysomes showing the majority bands of α-carboxysome proteins. ( C ) EM images of isolated native/recombinant α-carboxysomes.

Article Snippet: The data for label-free quantification search against H. neapolitanus protein database are available at: https://simplifi.protifi.com/#/p/e527f900-3e50-11eb-808d-871337eb317b .

Techniques: Purification, Isolation, Recombinant, Liquid Chromatography with Mass Spectroscopy, SDS Page

( A ) Protein index of all recognized proteins in label-free quantification. In native carboxysome samples, McdAB-like proteins are both detected. The full protein list provided in Supplemental File; ( B ) Comparison of QconCAT and label-free quantification. Quantification was normalized to equal total protein quantity. Proteins with the abundance difference greater than 30% from average are labelled in red; (C) Quantification of all QconCAT candidate peptides for H. neapolitanus carboxysomes. Overall good agreements are found within candidate peptides for same protein with the exception of peptide 3 of CsoSCA (34 ± 4 % lower than the other two) and CbbO (21 ± 3 %) in native carboxysome samples.

Journal: bioRxiv

Article Title: Decoding the absolute stoichiometric composition and structural plasticity of α-carboxysomes

doi: 10.1101/2021.12.06.471529

Figure Lengend Snippet: ( A ) Protein index of all recognized proteins in label-free quantification. In native carboxysome samples, McdAB-like proteins are both detected. The full protein list provided in Supplemental File; ( B ) Comparison of QconCAT and label-free quantification. Quantification was normalized to equal total protein quantity. Proteins with the abundance difference greater than 30% from average are labelled in red; (C) Quantification of all QconCAT candidate peptides for H. neapolitanus carboxysomes. Overall good agreements are found within candidate peptides for same protein with the exception of peptide 3 of CsoSCA (34 ± 4 % lower than the other two) and CbbO (21 ± 3 %) in native carboxysome samples.

Article Snippet: The data for label-free quantification search against H. neapolitanus protein database are available at: https://simplifi.protifi.com/#/p/e527f900-3e50-11eb-808d-871337eb317b .

Techniques: Quantitative Proteomics, Comparison